PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04614g07007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21607.4 Da    PI: 5.3532
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04614g07007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.65e-11441340
                              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                              i+ + +r+ tf k ++ ++KK +ELS+LC+++++ ii 
  Niben101Scf04614g07007.1  4 IQYHKKRKSTFQKKKACLIKKISELSILCNIKACTIIH 41
                              5567899***************************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.521140IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-13167IPR002100Transcription factor, MADS-box
SMARTSM004320.0013152IPR002100Transcription factor, MADS-box
PfamPF003194.2E-11443IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MELIQYHKKR KSTFQKKKAC LIKKISELSI LCNIKACTII HEGNNCEEIW PNNQNDGSFD  60
PFPEKESRNL AGVVEKKMEN AKGKSEFLKS YRNINQEIWD YPELVDNFNQ KLKSDFDHVN  120
SMGIFYNGQL STDDYEFGNS EYMKIEAEDW LVNNGIIGSS SRMQPMQLNQ LWTGYTDLMP  180
YGYMQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598741.12e-78PREDICTED: agamous-like MADS-box protein AGL92
TrEMBLK4D6Y44e-30K4D6Y4_SOLLC; Uncharacterized protein
STRINGSolyc11g020320.1.11e-29(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63421232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.12e-10M-type_MADS family protein